研究者学術情報データベース

トオサト　ユカコ
遠里　由佳子
TOHSATO Yukako

所属情報理工学部情報理工学科

職名教授

論文
1.	2024/12/08	Causal Interactions Among Phytoplankton and Pseudo-Nitzschia Species Revealed by Empirical Dynamic Modelling │ Science of the Total Environment │
2.	2024/10/31	SSBD: an ecosystem for enhanced sharing and reuse of bioimaging data │ Nucleic Acids Research │
3.	2024/05/01	Segmentation of mouse brain slices with unsupervised domain adaptation considering cross-sectional locations │ IPSJ Transactions on Bioinformatics │ 17,33-39頁
4.	2023/12/19	Large-scale image processing and three-dimensional reconstruction of mouse brains with neurogenic-tagged neurons │ Proceedings of the 13th International Conference on Biomedical Engineering and Technology (ICBET 2023) │ ,1-7頁
5.	2023/04/03	Metabolic network analysis by time-series causal inference using the multi-dimensional space of prediction errors │ IPSJ Transactions on Bioinformatics │ 16,13-19頁
6.	2023/02/17	Gene deletion algorithms for minimum reaction network design by mixed-integer linear programming for metabolite production in constraint-based models: gDel_minRN │ Journal of Computational Biology │ 30 (5),553-568頁
7.	2022/09/09	Phenotype anomaly detection for biological dynamics data using a deep generative model │ The 31st International Conference on Artificial Neural Networks (ICANN 2022), Lecture Notes in Computer Science │ 13530,432-444頁
8.	2022/09/07	Unsupervised domain adaptation using temporal association for segmentation and its application to C. elegans time-lapse images │ he 31st International Conference on Artificial Neural Networks (ICANN 2022) │ 13531,469-481頁
9.	2021/05/25	NeuroGT: a brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons │ Cell Reports Methods │ 1 (3),100012
10.	2021/05/16	Analyzing phenotype microarray data for Escherichia coli using an infinite relational model │ Proceedings of the 2020 IEEE 8th International Conference on Bioinformatics and Computational Biology (ICBCB 2020) │ ,125-129頁
11.	2021/05/16	Phenotype anomaly detection in early C. elegans embryos by variational auto-encoder │ Proceedings of the 2020 IEEE 8th International Conference on Bioinformatics and Computational Biology (ICBCB 2020) │ ,1-5頁
12.	2020/09	Temporal anomaly detection by deep generative models │ Proceedings of the 29th International Conference on Artificial Neural Networks (ICANN 2020) │ 12396,553-564頁
13.	2020/08/12	BD5: An open HDF5-based data format to represent quantitative biological dynamics data │ PLOS ONE │ 15 (8),e0237468
14.	2020/05/16	Analyzing phenotype microarray data for Escherichia coli using an infinite relational model │ Proceedings of the 2021 IEEE the 9th International Conference on Bioinformatics and Computational Biology (ICBCB 2021) │ 125 (129)
15.	2020/01	生命現象の時空間動態情報の可視化 │ 可視化情報学会誌特集号生物学のデータと可視化 │ 40 (156),25-28頁
16.	2019/07	Analysis of time series anomalies using causal InfoGAN and its application to biological data │ 1074,609-617頁
17.	2019/07	Characterizing phenotype abnormality by variational auto encoder │ roceedings of the 15th International Conference and Natural Computation, Fuzzy Systems and Knowledge Discovery (ICNC-FSKD 2019) │ 1074,618-626頁
18.	2017/05	Phenotype analysis method for identification of gene functions involved in asymmetric division of Caenorhabditis elegans │ Journal of Computational Biology │ 25 (5),436-446頁
19.	2016/11	Nuclear detection in 4D microscope images of developing embryo using enhanced probability map of top-ranked intensity-ordered descriptors │ IPSJ Transactions on Computer Vision and Application │ 8 (8)
20.	2016/06	SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena │ Bioinformatics │ 32 (22),3471-3479
21.	2015/11	Investigation of glycan evolution based on a comprehensive analysis of glycosyltransferases using phylogenetic profiling │ Biophysics and Physicobiology │ 12,57-68
22.	2015/04	Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data │ Bioinformatics │ 31 (7),1044-1052
23.	2015/01	GenoBase: Comprehensive resource database of Escherichia coli K-12 │ Nucleic Acids Research │ 43(Database issue),D606-D617
24.	2013/10	生命動態システム科学のデータベースの統合化 │ ,5-6
25.	2013/04	Biochemical studies on sphingolipids of Artemia franciscana: complex neutral glycosphingolipids │ Glycoconjugate Journal │ 30 (3),257-268
26.	2013/04	Parameter optimization and sensitivity analysis for large kinetic models using a real-coded genetic algorithm │ Genes (Suppl. for GIW 2012) │ 518 (1),84-90
27.	2013/02	ECOH: An Enzyme Commission number predictor using mutual information and a support vector machine │ Bioinformatics │ 29 (3),365-372
28.	2012/08	Comparative proteomic analysis reveals differentially expressed proteins in Caenorhabditis elegans pgl-1 mutants grown at 20°C and 25°C │ Journal of Proteomics │ 75 (15),4792-4801
29.	2012/08	Giochemical studies on sphingolipids of Artemia franciscana: complex neutral glycosphingolipids │ Glycoconjugate Journal │
30.	2012/08	Intrinsically disordered proteins in Human mitochondria │ Genes to Cells │ 17 (10),817-825
31.	2012/03	線虫Caenorhabditis elegansの発生ステージにおける定量プロテオーム解析 │ 立命館大学理工学研究所紀要 │ 70,13-20
32.	2012/03	相互情報量とSVMを用いた酵素反応におけるEC番号の推定法の開発 │ 70,21-28
33.	2011/03	2D-DIGEとiTRAQを用いた線虫 Caenorhabditis briggsaeの発生過程における比較定量プロテオーム解析 │ 立命館大学理工学研究所紀要 │ 69,109-116頁
34.	2011/03	セイヨウミツバチApis mellifera (雄蜂20日齢)におけるスフィンゴ糖脂質の構造解析 │ 立命館大学理工学研究所紀要 │ 69,99-108頁
35.	2011/03	大腸菌の中央代謝経路モデルと実数型遺伝的アルゴリズムを用いたパラメータ調節機構の構築 │ 立命館大学理工学研究所紀要 │ 69,89-97
36.	2011/03	培養温度25度における線虫 Caenorhabditis elegansの発生プロテオーム解析 │ 立命館大学理工学研究所紀要 │ 69,81-88頁
37.	2010/09	Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli │ Journal Bioinformatics and Computational Biology (Suppl. for GIW 2010) │ 8 (1),1-17頁
38.	2009/03	Reaction similarities focusing substructure changes of chemical compounds and metabolic pathway alignments │ IPSJ Transactions on Bioinformatics │ 2,15-24頁
39.	2008/12/01	Phenotype profiling of single gene deletion mutants of E. coli using Biolog technology │ Genome Informatics (GIW 2008) │ ,42-5201頁
40.	2007/07	Metabolic pathway alignment based on similarity between chemical structures │ IPSJ Transactions on Bioinformatics │ 48 (SIG17 (TBIO3)),9-18頁
41.	2006/11	A method for species comparison of metabolic networks using reaction profile │ IPSJ Transactions on Bioinformatics │ 47 (SIG17 (TOM1)),42-47頁
42.	2005/06	An OGSA-based integration of life scientific resources for drug discovery │ Methods of Information in Medicine │ 44 (2),257-261頁
43.	2005/02	Heterogeneous database federation using grid technology for drug discovery process, grid computing in life science │ Lecture Notes in Bioinformatics │ 3370,43-52頁
44.	2004/07	Development of a database system for drug discovery by employing grid technology │ Proceedings of the 7th International Conference on High Performance Computing and Grid in Asia Pacific Region (HPCAsia2004), IEEE CS Press │ ,365-369頁
45.	2004/05/31	Heterogeneous database Federation using grid technology for drug discovery process │ Proceedings of the First International Workshop on Life Science Grid (LSGRID2004) │ ,53-62頁
46.	2003/07	An Application of a Pathway Alignment Method to the Analysis of Metabolic Pathways │ Research Communications in Biochemistry, Cell and Molecular Biology │ 5 (3 & 4),179-191
47.	2003/03/26	A Clustering Method for Comparative Analysis between Genomes and Pathways │ Proceedings of the 8th International Conference on Database Systems for Advanced Applications (DASFAA 2003) │ ,327-334頁
48.	2000/11/06	パスウェイ解析のための情報量最大化アライメントアルゴリズム │ 情報処理学会論文誌：数理モデル化と応用 │ 41 (SIG7),41-48頁
49.	2000/08/19	A Multiple Alignment Algorithm to Metabolic Pathway Analysis using Enzyme Hierarchy │ Proceedings of the 8th International Conference on Intelligent Systems for Molecular Biology (ISMB 2000) │ ,376-383頁